Abstract
The rice species Oryza sativa is considered to be a model plant because of its small genome size, extensive genetic map, relative ease of transformation and synteny with other cereal crops1-4. Here we report the essentially complete sequence of chromosome 1, the longest chromosome in the rice genome. We summarize characteristics of the chromosome structure and the biological insight gained from the sequence. The analysis of 43.3 megabases (Mb) of non-overlapping sequence reveals 6,756 protein coding genes, of which 3,161 show homology to proteins of Arabidopsis thaliana, another model plant. About 30% (2,073) of the genes have been functionally categorized. Rice chromosome 1 is (G + C)-rich, especially in its coding regions, and is characterized by several gene families that are dispersed or arranged in tandem repeats. Comparison with a draft sequences5 indicates the importance of a high-quality finished sequence.
Original language | English (US) |
---|---|
Pages (from-to) | 312-316 |
Number of pages | 5 |
Journal | Nature |
Volume | 420 |
Issue number | 6913 |
DOIs | |
State | Published - Nov 21 2002 |
ASJC Scopus subject areas
- General
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The genome sequence and structure of rice chromosome 1. / Sasaki, Takuji; Matsumoto, Takashi; Yamamoto, Kimiko; Sakata, Katsumi; Baba, Tomoya; Katayose, Yuichi; Wu, Jianzhong; Niimura, Yoshihito; Cheng, Zhukuan; Nagamura, Yoshiaki; Antonio, Baltazar A.; Kanamori, Hiroyuki; Hosokawa, Satomi; Masukawa, Masatoshi; Arikawa, Koji; Chiden, Yoshino; Hayashi, Mika; Okamoto, Masako; Ando, Tsuyu; Aoki, Hiroyoshi; Arita, Kohei; Hamada, Masao; Harada, Chizuko; Hijishita, Saori; Honda, Mikiko; Ichikawa, Yoko; Idonuma, Atsuko; Iijlma, Masumi; Ikeda, Michiko; Ikeno, Maiko; Ito, Sachle; Ito, Tomoko; Ito, Yuichi; Ito, Yukiyo; Iwabuchi, Aki; Kamiya, Kozue; Karasawa, Wataru; Katagiri, Satoshi; Kikuta, Ari; Kobayashi, Noriko; Kono, Izumi; Machita, Kayo; Maehara, Tomoko; Mizuno, Hiroshi; Mizubayashi, Tatsumi; Mukai, Yoshiyuki; Nagasaki, Hideki; Nakashima, Marina; Nakama, Yuko; Nakamichi, Yumi; Nakamura, Mari; Namiki, Nobukazu; Negishi, Manami; Ohta, Isamu; Ono, Nozomi; Saji, Shoko; Sakai, Kumiko; Shibata, Michie; Shimokawa, Takanori; Shomura, Ayahiko; Song, Jianyu; Takazaki, Yuka; Terasawa, Kimihiro; Tsuji, Kumiko; Waki, Kazunori; Yamagata, Harumi; Yamane, Hiroko; Yoshiki, Shoji; Yoshihara, Rie; Yukawa, Kazuko; Zhong, Huisun; Iwama, Hisakazu; Endo, Toshinori; Ito, Hidetaka; Hahn, Jang Ho; Kim, Ho Il; Eun, Moo Young; Yano, Masahiro; Jiang, Jiming; Gojobori, Takashi.
In: Nature, Vol. 420, No. 6913, 21.11.2002, p. 312-316.Research output: Contribution to journal › Article › peer-review
TY - JOUR
T1 - The genome sequence and structure of rice chromosome 1
AU - Sasaki, Takuji
AU - Matsumoto, Takashi
AU - Yamamoto, Kimiko
AU - Sakata, Katsumi
AU - Baba, Tomoya
AU - Katayose, Yuichi
AU - Wu, Jianzhong
AU - Niimura, Yoshihito
AU - Cheng, Zhukuan
AU - Nagamura, Yoshiaki
AU - Antonio, Baltazar A.
AU - Kanamori, Hiroyuki
AU - Hosokawa, Satomi
AU - Masukawa, Masatoshi
AU - Arikawa, Koji
AU - Chiden, Yoshino
AU - Hayashi, Mika
AU - Okamoto, Masako
AU - Ando, Tsuyu
AU - Aoki, Hiroyoshi
AU - Arita, Kohei
AU - Hamada, Masao
AU - Harada, Chizuko
AU - Hijishita, Saori
AU - Honda, Mikiko
AU - Ichikawa, Yoko
AU - Idonuma, Atsuko
AU - Iijlma, Masumi
AU - Ikeda, Michiko
AU - Ikeno, Maiko
AU - Ito, Sachle
AU - Ito, Tomoko
AU - Ito, Yuichi
AU - Ito, Yukiyo
AU - Iwabuchi, Aki
AU - Kamiya, Kozue
AU - Karasawa, Wataru
AU - Katagiri, Satoshi
AU - Kikuta, Ari
AU - Kobayashi, Noriko
AU - Kono, Izumi
AU - Machita, Kayo
AU - Maehara, Tomoko
AU - Mizuno, Hiroshi
AU - Mizubayashi, Tatsumi
AU - Mukai, Yoshiyuki
AU - Nagasaki, Hideki
AU - Nakashima, Marina
AU - Nakama, Yuko
AU - Nakamichi, Yumi
AU - Nakamura, Mari
AU - Namiki, Nobukazu
AU - Negishi, Manami
AU - Ohta, Isamu
AU - Ono, Nozomi
AU - Saji, Shoko
AU - Sakai, Kumiko
AU - Shibata, Michie
AU - Shimokawa, Takanori
AU - Shomura, Ayahiko
AU - Song, Jianyu
AU - Takazaki, Yuka
AU - Terasawa, Kimihiro
AU - Tsuji, Kumiko
AU - Waki, Kazunori
AU - Yamagata, Harumi
AU - Yamane, Hiroko
AU - Yoshiki, Shoji
AU - Yoshihara, Rie
AU - Yukawa, Kazuko
AU - Zhong, Huisun
AU - Iwama, Hisakazu
AU - Endo, Toshinori
AU - Ito, Hidetaka
AU - Hahn, Jang Ho
AU - Kim, Ho Il
AU - Eun, Moo Young
AU - Yano, Masahiro
AU - Jiang, Jiming
AU - Gojobori, Takashi
PY - 2002/11/21
Y1 - 2002/11/21
N2 - The rice species Oryza sativa is considered to be a model plant because of its small genome size, extensive genetic map, relative ease of transformation and synteny with other cereal crops1-4. Here we report the essentially complete sequence of chromosome 1, the longest chromosome in the rice genome. We summarize characteristics of the chromosome structure and the biological insight gained from the sequence. The analysis of 43.3 megabases (Mb) of non-overlapping sequence reveals 6,756 protein coding genes, of which 3,161 show homology to proteins of Arabidopsis thaliana, another model plant. About 30% (2,073) of the genes have been functionally categorized. Rice chromosome 1 is (G + C)-rich, especially in its coding regions, and is characterized by several gene families that are dispersed or arranged in tandem repeats. Comparison with a draft sequences5 indicates the importance of a high-quality finished sequence.
AB - The rice species Oryza sativa is considered to be a model plant because of its small genome size, extensive genetic map, relative ease of transformation and synteny with other cereal crops1-4. Here we report the essentially complete sequence of chromosome 1, the longest chromosome in the rice genome. We summarize characteristics of the chromosome structure and the biological insight gained from the sequence. The analysis of 43.3 megabases (Mb) of non-overlapping sequence reveals 6,756 protein coding genes, of which 3,161 show homology to proteins of Arabidopsis thaliana, another model plant. About 30% (2,073) of the genes have been functionally categorized. Rice chromosome 1 is (G + C)-rich, especially in its coding regions, and is characterized by several gene families that are dispersed or arranged in tandem repeats. Comparison with a draft sequences5 indicates the importance of a high-quality finished sequence.
UR - http://www.scopus.com/inward/record.url?scp=0037153190&partnerID=8YFLogxK
U2 - 10.1038/nature01184
DO - 10.1038/nature01184
M3 - Article
C2 - 12447438
AN - SCOPUS:0037153190
VL - 420
SP - 312
EP - 316
JO - Nature
JF - Nature
SN - 0028-0836
IS - 6913
ER -