Abstract
| Original language | English (US) |
|---|---|
| Journal | Science |
| Volume | 326 |
| Issue number | 5956 |
| DOIs | |
| State | Published - Nov 20 2009 |
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The B73 maize genome: Complexity, diversity, and dynamics. / Schnable, Patrick S.; Ware, Doreen; Fulton, Robert S.; Stein, Joshua C.; Wei, Fusheng; Pasternak, Shiran; Liang, Chengzhi; Zhang, Jianwei; Fulton, Lucinda; Graves, Tina A.; Minx, Patrick; Reily, Amy Denise; Courtney, Laura; Kruchowski, Scott S.; Tomlinson, Chad; Strong, Cindy; Delehaunty, Kim; Fronick, Catrina; Courtney, Bill; Rock, Susan M.; Belter, Eddie; Du, Feiyu; Kim, Kyung; Abbott, Rachel M.; Cotton, Marc; Levy, Andy; Marchetto, Pamela; Ochoa, Kerri; Jackson, Stephanie M.; Gillam, Barbara; Chen, Weizu; Yan, Le; Higginbotham, Jamey; Cardenas, Marco; Waligorski, Jason; Applebaum, Elizabeth; Phelps, Lindsey; Falcone, Jason; Kanchi, Krishna; Thane, Thynn; Scimone, Adam; Thane, Nay; Henke, Jessica; Wang, Tom; Ruppert, Jessica; Shah, Neha; Rotter, Kelsi; Hodges, Jennifer; Ingenthron, Elizabeth; Cordes, Matt; Kohlberg, Sara; Sgro, Jennifer; Delgado, Brandon; Mead, Kelly; Chinwalla, Asif; Leonard, Shawn; Crouse, Kevin; Collura, Kristi; Kudrna, Dave; Currie, Jennifer; He, Ruifeng; Angelova, Angelina; Rajasekar, Shanmugam; Mueller, Teri; Lomeli, Rene; Scara, Gabriel; Ko, Ara; Delaney, Krista; Wissotski, Marina; Lopez, Georgina; Campos, David; Braidotti, Michele; Ashley, Elizabeth; Golser, Wolfgang; Kim, Hyeran; Lee, Seunghee; Lin, Jinke; Dujmic, Zeljko; Kim, Woojin; Talag, Jayson; Zuccolo, Andrea; Fan, Chuanzhu; Sebastian, Aswathy; Kramer, Melissa; Spiegel, Lori; Nascimento, Lidia; Zutavern, Theresa; Miller, Beth; Ambroise, Claude; Muller, Stephanie; Spooner, Will; Narechania, Apurva; Ren, Liya; Wei, Sharon; Kumari, Sunita; Faga, Ben; Levy, Michael J.; McMahan, Linda; Van Buren, Peter; Vaughn, Matthew W.; Ying, Kai; Yeh, Cheng Ting; Emrich, Scott J.; Jia, Yi; Kalyanaraman, Ananth; Hsia, An Ping; Barbazuk, W. Brad; Baucom, Regina S.; Brutnell, Thomas P.; Carpita, Nicholas C.; Chaparro, Cristian; Chia, Jer Ming; Deragon, Jean Marc; Estill, James C.; Fu, Yan; Jeddeloh, Jeffrey A.; Han, Yujun; Lee, Hyeran; Li, Pinghua; Lisch, Damon R.; Liu, Sanzhen; Liu, Zhijie; Nagel, Dawn Holligan; McCann, Maureen C.; Sanmiguel, Phillip; Myers, Alan M.; Nettleton, Dan; Nguyen, John; Penning, Bryan W.; Ponnala, Lalit; Schneider, Kevin L.; Schwartz, David C.; Sharma, Anupma; Soderlund, Carol; Springer, Nathan M.; Sun, Qi; Wang, Hao; Waterman, Michael; Westerman, Richard; Wolfgruber, Thomas K.; Yang, Lixing; Yu, Yeisoo; Zhang, Lifang; Zhou, Shiguo; Zhu, Qihui; Bennetzen, Jeffrey L.; Dawe, R. Kelly; Jiang, Jiming; Jiang, Ning; Presting, Gernot G.; Wessler, Susan R.; Aluru, Srinivas; Martienssen, Robert A.; Clifton, Sandra W.; McCombie, W. Richard; Wing, Rod A.; Wilson, Richard K.
In: Science, Vol. 326, No. 5956, 20.11.2009.Research output: Contribution to journal › Article › peer-review
TY - JOUR
T1 - The B73 maize genome: Complexity, diversity, and dynamics
AU - Schnable, Patrick S.
AU - Ware, Doreen
AU - Fulton, Robert S.
AU - Stein, Joshua C.
AU - Wei, Fusheng
AU - Pasternak, Shiran
AU - Liang, Chengzhi
AU - Zhang, Jianwei
AU - Fulton, Lucinda
AU - Graves, Tina A.
AU - Minx, Patrick
AU - Reily, Amy Denise
AU - Courtney, Laura
AU - Kruchowski, Scott S.
AU - Tomlinson, Chad
AU - Strong, Cindy
AU - Delehaunty, Kim
AU - Fronick, Catrina
AU - Courtney, Bill
AU - Rock, Susan M.
AU - Belter, Eddie
AU - Du, Feiyu
AU - Kim, Kyung
AU - Abbott, Rachel M.
AU - Cotton, Marc
AU - Levy, Andy
AU - Marchetto, Pamela
AU - Ochoa, Kerri
AU - Jackson, Stephanie M.
AU - Gillam, Barbara
AU - Chen, Weizu
AU - Yan, Le
AU - Higginbotham, Jamey
AU - Cardenas, Marco
AU - Waligorski, Jason
AU - Applebaum, Elizabeth
AU - Phelps, Lindsey
AU - Falcone, Jason
AU - Kanchi, Krishna
AU - Thane, Thynn
AU - Scimone, Adam
AU - Thane, Nay
AU - Henke, Jessica
AU - Wang, Tom
AU - Ruppert, Jessica
AU - Shah, Neha
AU - Rotter, Kelsi
AU - Hodges, Jennifer
AU - Ingenthron, Elizabeth
AU - Cordes, Matt
AU - Kohlberg, Sara
AU - Sgro, Jennifer
AU - Delgado, Brandon
AU - Mead, Kelly
AU - Chinwalla, Asif
AU - Leonard, Shawn
AU - Crouse, Kevin
AU - Collura, Kristi
AU - Kudrna, Dave
AU - Currie, Jennifer
AU - He, Ruifeng
AU - Angelova, Angelina
AU - Rajasekar, Shanmugam
AU - Mueller, Teri
AU - Lomeli, Rene
AU - Scara, Gabriel
AU - Ko, Ara
AU - Delaney, Krista
AU - Wissotski, Marina
AU - Lopez, Georgina
AU - Campos, David
AU - Braidotti, Michele
AU - Ashley, Elizabeth
AU - Golser, Wolfgang
AU - Kim, Hyeran
AU - Lee, Seunghee
AU - Lin, Jinke
AU - Dujmic, Zeljko
AU - Kim, Woojin
AU - Talag, Jayson
AU - Zuccolo, Andrea
AU - Fan, Chuanzhu
AU - Sebastian, Aswathy
AU - Kramer, Melissa
AU - Spiegel, Lori
AU - Nascimento, Lidia
AU - Zutavern, Theresa
AU - Miller, Beth
AU - Ambroise, Claude
AU - Muller, Stephanie
AU - Spooner, Will
AU - Narechania, Apurva
AU - Ren, Liya
AU - Wei, Sharon
AU - Kumari, Sunita
AU - Faga, Ben
AU - Levy, Michael J.
AU - McMahan, Linda
AU - Van Buren, Peter
AU - Vaughn, Matthew W.
AU - Ying, Kai
AU - Yeh, Cheng Ting
AU - Emrich, Scott J.
AU - Jia, Yi
AU - Kalyanaraman, Ananth
AU - Hsia, An Ping
AU - Barbazuk, W. Brad
AU - Baucom, Regina S.
AU - Brutnell, Thomas P.
AU - Carpita, Nicholas C.
AU - Chaparro, Cristian
AU - Chia, Jer Ming
AU - Deragon, Jean Marc
AU - Estill, James C.
AU - Fu, Yan
AU - Jeddeloh, Jeffrey A.
AU - Han, Yujun
AU - Lee, Hyeran
AU - Li, Pinghua
AU - Lisch, Damon R.
AU - Liu, Sanzhen
AU - Liu, Zhijie
AU - Nagel, Dawn Holligan
AU - McCann, Maureen C.
AU - Sanmiguel, Phillip
AU - Myers, Alan M.
AU - Nettleton, Dan
AU - Nguyen, John
AU - Penning, Bryan W.
AU - Ponnala, Lalit
AU - Schneider, Kevin L.
AU - Schwartz, David C.
AU - Sharma, Anupma
AU - Soderlund, Carol
AU - Springer, Nathan M.
AU - Sun, Qi
AU - Wang, Hao
AU - Waterman, Michael
AU - Westerman, Richard
AU - Wolfgruber, Thomas K.
AU - Yang, Lixing
AU - Yu, Yeisoo
AU - Zhang, Lifang
AU - Zhou, Shiguo
AU - Zhu, Qihui
AU - Bennetzen, Jeffrey L.
AU - Dawe, R. Kelly
AU - Jiang, Jiming
AU - Jiang, Ning
AU - Presting, Gernot G.
AU - Wessler, Susan R.
AU - Aluru, Srinivas
AU - Martienssen, Robert A.
AU - Clifton, Sandra W.
AU - McCombie, W. Richard
AU - Wing, Rod A.
AU - Wilson, Richard K.
N1 - Generated from Scopus record by KAUST IRTS on 2019-11-20
PY - 2009/11/20
Y1 - 2009/11/20
N2 - We report an improved draft nucleotide sequence of the 2.3-gigabase genome of maize, an important crop plant and model for biological research. Over 32,000 genes were predicted, of which 99.8% were placed on reference chromosomes. Nearly 85% of the genome is composed of hundreds of families of transposable elements, dispersed nonuniformly across the genome. These were responsible for the capture and amplification of numerous gene fragments and affect the composition, sizes, and positions of centromeres. We also report on the correlation of methylationpoor regions with Mu transposon insertions and recombination, and copy number variants with insertions and/or deletions, as well as how uneven gene losses between duplicated regions were involved in returning an ancient allotetraploid to a genetically diploid state. These analyses inform and set the stage for further investigations to improve our understanding of the domestication and agricultural improvements of maize.
AB - We report an improved draft nucleotide sequence of the 2.3-gigabase genome of maize, an important crop plant and model for biological research. Over 32,000 genes were predicted, of which 99.8% were placed on reference chromosomes. Nearly 85% of the genome is composed of hundreds of families of transposable elements, dispersed nonuniformly across the genome. These were responsible for the capture and amplification of numerous gene fragments and affect the composition, sizes, and positions of centromeres. We also report on the correlation of methylationpoor regions with Mu transposon insertions and recombination, and copy number variants with insertions and/or deletions, as well as how uneven gene losses between duplicated regions were involved in returning an ancient allotetraploid to a genetically diploid state. These analyses inform and set the stage for further investigations to improve our understanding of the domestication and agricultural improvements of maize.
UR - http://www.sciencemag.org/cgi/doi/10.1126/science.1178534
UR - http://www.scopus.com/inward/record.url?scp=70450202132&partnerID=8YFLogxK
U2 - 10.1126/science.1178534
DO - 10.1126/science.1178534
M3 - Article
VL - 326
JO - Science
JF - Science
SN - 0036-8075
IS - 5956
ER -