SnoopCGH: Software for visualizing comparative genomic hybridization data

Jacob Almagro-Garcia, Magnus Manske, Celine Carret, Susana Campino, Sarah Auburn, Bronwyn L. MacInnis, Gareth Maslen, Arnab Pain, Christopher I. Newbold, Dominic P. Kwiatkowski, Taane G. Clark*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

9 Scopus citations

Abstract

Array-based comparative genomic hybridization (CGH) technology is used to discover and validate genomic structural variation, including copy number variants, insertions, deletions and other structural variants (SVs). The visualization and summarization of the array CGH data outputs, potentially across many samples, is an important process in the identification and analysis of SVs. We have developed a software tool for SV analysis using data from array CGH technologies, which is also amenable to short-read sequence data.

Original languageEnglish (US)
Pages (from-to)2732-2733
Number of pages2
JournalBioinformatics
Volume25
Issue number20
DOIs
StatePublished - Oct 20 2009

ASJC Scopus subject areas

  • Biochemistry
  • Molecular Biology
  • Computational Theory and Mathematics
  • Computer Science Applications
  • Computational Mathematics
  • Statistics and Probability

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