Rice Transposable elements: A survey of 73,000 sequence-tagged-connectors

Long Mao, Todd C. Wood, Yeisoo Yu, Muhammad A. Budiman, Jeff Tomkins, Sung Sick Woo, Maciek Sasinowski, Gernot Presting, David Frisch, Steve Goff, Ralph A. Dean, Rod A. Wing

Research output: Contribution to journalArticlepeer-review

171 Scopus citations

Abstract

As part of an international effort to sequence the rice genome, the Clemson University Genomics Institute is developing a sequence-tagged-connector (STC) framework. This framework includes the generation of deep-coverage BAC libraries from O. sativa ssp. japonica c.v. Nipponbare and the sequencing of both ends of the genomic DNA insert of the BAC clones. Here, we report a survey of the transposable elements (TE) in >73,000 STCs. A total of 6848 STCs were found homologous to regions of known TE sequences (E
Original languageEnglish (US)
JournalGenome Research
Volume10
Issue number7
DOIs
StatePublished - Aug 17 2000
Externally publishedYes

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