Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)

Guangyi Fan; Yue Song; Liandong Yang; Xiaoyun Huang; Suyu Zhang; Mengqi Zhang; Xianwei Yang; Yue Chang; He Zhang; Yongxin Li; Shanshan Liu; Lili Yu; Jeffery Chu; Inge Seim; Chenguang Feng; Thomas J Near; Rod Anthony Wing; Wen Wang; Kun Wang; Jing Wang; Xun Xu; Huanming Yang; Xin Liu; Nansheng Chen; Shunping He

doi:10.1093/gigascience/giaa080

Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)

Guangyi Fan, Yue Song, Liandong Yang, Xiaoyun Huang, Suyu Zhang, Mengqi Zhang, Xianwei Yang, Yue Chang, He Zhang, Yongxin Li, Shanshan Liu, Lili Yu, Jeffery Chu, Inge Seim, Chenguang Feng, Thomas J Near, Rod Anthony Wing, Wen Wang, Kun Wang, Jing WangXun Xu, Huanming Yang, Xin Liu, Nansheng Chen, Shunping He

Research output: Contribution to journal › Article › peer-review

2 Scopus citations

Abstract

Background With more than 30,000 species, fish—including bony, jawless, and cartilaginous fish—are the largest vertebrate group, and include some of the earliest vertebrates. Despite their critical roles in many ecosystems and human society, fish genomics lags behind work on birds and mammals. This severely limits our understanding of evolution and hinders progress on the conservation and sustainable utilization of fish. Results Here, we announce the Fish10K project, a portion of the Earth BioGenome Project aiming to sequence 10,000 representative fish genomes in a systematic fashion within 10 years, and we officially welcome collaborators to join this effort. As a step towards this goal, we herein describe a feasible workflow for the procurement and storage of biospecimens, as well as sequencing and assembly strategies. Conclusions To illustrate, we present the genomes of 10 fish species from a cohort of 93 species chosen for technology development.

Original language	English (US)
Journal	GigaScience
Volume	9
Issue number	8
DOIs	https://doi.org/10.1093/gigascience/giaa080
State	Published - Aug 18 2020

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10.1093/gigascience/giaa080

https://repository.kaust.edu.sa/bitstream/10754/664661/1/initial%20data%20release.pdf

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Fish10K Pilot Project Data
Fan, G. (Creator), Song, Y. (Creator), Yang, L. (Creator), Huang, X. (Creator), Zhang, S. (Creator), Zhang, M. (Creator), Yang, X. (Creator), Chang, Y. (Creator), Zhang, H. (Creator), Li, Y. (Creator), Liu, S. (Creator), Yu, L. (Creator), Chu, J. (Creator), Seim, I. (Creator), Feng, C. (Creator), Near, T. J. (Creator), Wing, R. (Creator), Wang, W. (Creator), Wang, K. (Creator), Wang, J. (Creator), Xu, X. (Creator), Yang, H. (Creator), Liu, X. (Creator), Chen, N. (Creator), He, S. (Creator), Fan, G. (Creator), Song, Y. (Creator), Yang, L. (Creator), Huang, X. (Creator), Zhang, S. (Creator), Zhang, M. (Creator), Yang, X. (Creator), Chang, Y. (Creator), Zhang, H. (Creator), Li, Y. (Creator), Liu, S. (Creator), Yu, L. (Creator), Chu, J. (Creator), Seim, I. (Creator), Feng, C. (Creator), Near, T. J. (Creator), Wang, W. (Creator), Wang, K. (Creator), Wang, J. (Creator), Xu, X. (Creator), Yang, H. (Creator), Liu, X. (Creator), Chen, N. (Creator) & He, S. (Creator), GigaScience Database, 2020
DOI: 10.5524/100661, http://hdl.handle.net/10754/664974
Dataset

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Fan, Guangyi ; Song, Yue ; Yang, Liandong ; Huang, Xiaoyun ; Zhang, Suyu ; Zhang, Mengqi ; Yang, Xianwei ; Chang, Yue ; Zhang, He ; Li, Yongxin ; Liu, Shanshan ; Yu, Lili ; Chu, Jeffery ; Seim, Inge ; Feng, Chenguang ; Near, Thomas J ; Wing, Rod Anthony ; Wang, Wen ; Wang, Kun ; Wang, Jing ; Xu, Xun ; Yang, Huanming ; Liu, Xin ; Chen, Nansheng ; He, Shunping. / Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K). In: GigaScience. 2020 ; Vol. 9, No. 8.

@article{8bc3fc9cf94b48068a40d428acedce01,

title = "Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)",

abstract = "Background With more than 30,000 species, fish—including bony, jawless, and cartilaginous fish—are the largest vertebrate group, and include some of the earliest vertebrates. Despite their critical roles in many ecosystems and human society, fish genomics lags behind work on birds and mammals. This severely limits our understanding of evolution and hinders progress on the conservation and sustainable utilization of fish. Results Here, we announce the Fish10K project, a portion of the Earth BioGenome Project aiming to sequence 10,000 representative fish genomes in a systematic fashion within 10 years, and we officially welcome collaborators to join this effort. As a step towards this goal, we herein describe a feasible workflow for the procurement and storage of biospecimens, as well as sequencing and assembly strategies. Conclusions To illustrate, we present the genomes of 10 fish species from a cohort of 93 species chosen for technology development.",

author = "Guangyi Fan and Yue Song and Liandong Yang and Xiaoyun Huang and Suyu Zhang and Mengqi Zhang and Xianwei Yang and Yue Chang and He Zhang and Yongxin Li and Shanshan Liu and Lili Yu and Jeffery Chu and Inge Seim and Chenguang Feng and Near, {Thomas J} and Wing, {Rod Anthony} and Wen Wang and Kun Wang and Jing Wang and Xun Xu and Huanming Yang and Xin Liu and Nansheng Chen and Shunping He",

note = "KAUST Repository Item: Exported on 2020-10-01 Acknowledgements: The work also received the technical support from China National Gene Bank.",

year = "2020",

month = aug,

day = "18",

doi = "10.1093/gigascience/giaa080",

language = "English (US)",

volume = "9",

journal = "GigaScience",

issn = "2047-217X",

publisher = "Oxford University Press",

number = "8",

}

Fan, G, Song, Y, Yang, L, Huang, X, Zhang, S, Zhang, M, Yang, X, Chang, Y, Zhang, H, Li, Y, Liu, S, Yu, L, Chu, J, Seim, I, Feng, C, Near, TJ, Wing, RA, Wang, W, Wang, K, Wang, J, Xu, X, Yang, H, Liu, X, Chen, N & He, S 2020, 'Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)', GigaScience, vol. 9, no. 8. https://doi.org/10.1093/gigascience/giaa080

Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K). / Fan, Guangyi; Song, Yue; Yang, Liandong; Huang, Xiaoyun; Zhang, Suyu; Zhang, Mengqi; Yang, Xianwei; Chang, Yue; Zhang, He; Li, Yongxin; Liu, Shanshan; Yu, Lili; Chu, Jeffery; Seim, Inge; Feng, Chenguang; Near, Thomas J; Wing, Rod Anthony; Wang, Wen; Wang, Kun; Wang, Jing; Xu, Xun; Yang, Huanming; Liu, Xin; Chen, Nansheng; He, Shunping.

In: GigaScience, Vol. 9, No. 8, 18.08.2020.

Research output: Contribution to journal › Article › peer-review

TY - JOUR

T1 - Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)

AU - Fan, Guangyi

AU - Song, Yue

AU - Yang, Liandong

AU - Huang, Xiaoyun

AU - Zhang, Suyu

AU - Zhang, Mengqi

AU - Yang, Xianwei

AU - Chang, Yue

AU - Zhang, He

AU - Li, Yongxin

AU - Liu, Shanshan

AU - Yu, Lili

AU - Chu, Jeffery

AU - Seim, Inge

AU - Feng, Chenguang

AU - Near, Thomas J

AU - Wing, Rod Anthony

AU - Wang, Wen

AU - Wang, Kun

AU - Wang, Jing

AU - Xu, Xun

AU - Yang, Huanming

AU - Liu, Xin

AU - Chen, Nansheng

AU - He, Shunping

N1 - KAUST Repository Item: Exported on 2020-10-01 Acknowledgements: The work also received the technical support from China National Gene Bank.

PY - 2020/8/18

Y1 - 2020/8/18

N2 - Background With more than 30,000 species, fish—including bony, jawless, and cartilaginous fish—are the largest vertebrate group, and include some of the earliest vertebrates. Despite their critical roles in many ecosystems and human society, fish genomics lags behind work on birds and mammals. This severely limits our understanding of evolution and hinders progress on the conservation and sustainable utilization of fish. Results Here, we announce the Fish10K project, a portion of the Earth BioGenome Project aiming to sequence 10,000 representative fish genomes in a systematic fashion within 10 years, and we officially welcome collaborators to join this effort. As a step towards this goal, we herein describe a feasible workflow for the procurement and storage of biospecimens, as well as sequencing and assembly strategies. Conclusions To illustrate, we present the genomes of 10 fish species from a cohort of 93 species chosen for technology development.

AB - Background With more than 30,000 species, fish—including bony, jawless, and cartilaginous fish—are the largest vertebrate group, and include some of the earliest vertebrates. Despite their critical roles in many ecosystems and human society, fish genomics lags behind work on birds and mammals. This severely limits our understanding of evolution and hinders progress on the conservation and sustainable utilization of fish. Results Here, we announce the Fish10K project, a portion of the Earth BioGenome Project aiming to sequence 10,000 representative fish genomes in a systematic fashion within 10 years, and we officially welcome collaborators to join this effort. As a step towards this goal, we herein describe a feasible workflow for the procurement and storage of biospecimens, as well as sequencing and assembly strategies. Conclusions To illustrate, we present the genomes of 10 fish species from a cohort of 93 species chosen for technology development.

UR - http://hdl.handle.net/10754/664661

UR - https://academic.oup.com/gigascience/article/doi/10.1093/gigascience/giaa080/5893976

U2 - 10.1093/gigascience/giaa080

DO - 10.1093/gigascience/giaa080

M3 - Article

C2 - 32810278

VL - 9

JO - GigaScience

JF - GigaScience

SN - 2047-217X

IS - 8

ER -

Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K)

Abstract

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Fish10K Pilot Project Data

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