Human genome network platform: A resource for TFRN analysis

Norikazu Monma, Takashi Gojobori, Kazuho Ikeo

Research output: Contribution to journalArticlepeer-review

Abstract

Genome Network Project (GNP) (Carninci et al., Science 309:1559–1563, 2005) Platform was developed as an integrated database, opening to the public the research fi ndings within the GNP initiatives. Since the fi rst release in 2006, it has gained a large amount of access from all over the world with public favor. The platform is unique and useful in that various types of experimental data for transcriptome analysis are intensively collected, organized, integrated, and visualized with major public datasets; and it can be freely accessed through a single interface with advanced search functionalities. This chapter describes the outline of GNP Platform, mainly elaborating on gene description model GNP Platform employed, major functionalities the platform provides, and a few examples of exploring the GNP Platform.

Original languageEnglish (US)
Pages (from-to)147-162
Number of pages16
JournalMethods in Molecular Biology
Volume1164
DOIs
StatePublished - Jan 1 2014

Keywords

  • CAGE
  • ChIP–chip
  • Gene expression
  • Integrated database
  • Microarray
  • PPI
  • TSS
  • Transcription factor

ASJC Scopus subject areas

  • Molecular Biology
  • Genetics

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