Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza

Hye Ran Kim, Bonnie Hurwitz, Yeisoo Yu, Kristi Collura, Navdeep Gill, Phillip SanMiguel, James C. Mullikin, Christopher Maher, William Nelson, Marina Wissotski, Michele Braidotti, David Kudrna, José Luis Goicoechea, Lincoln Stein, Doreen Ware, Scott A. Jackson, Carol Soderlund, Rod A. Wing

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73 Scopus citations

Abstract

We describe the establishment and analysis of a genus-wide comparative framework composed of 12 bacterial artificial chromosome fingerprint and end-sequenced physical maps representing the 10 genome types of Oryza aligned to the O. sativa ssp. japonica reference genome sequence. Over 932 Mb of end sequence was analyzed for repeats, simple sequence repeats, miRNA and single nucleotide variations, providing the most extensive analysis of Oryza sequence to date. © 2008 Kim et al.; licensee BioMed Central Ltd.
Original languageEnglish (US)
JournalGenome biology
Volume9
Issue number2
DOIs
StatePublished - Feb 28 2008
Externally publishedYes

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