Codon usage tabulated from the international DNA sequence databases; its status 1999

Yasukazu Nakamura*, Takashi Gojobori, Toshimichi Ikemura

*Corresponding author for this work

Research output: Contribution to journalShort surveypeer-review

156 Scopus citations

Abstract

Frequencies for each of the 206,526 complete protein-coding genes (CDS's) have been compiled from taxonomical divisions of the GenBank DNA sequence database. The sum of the codon use of 7434 organisms has also been calculated. These data files can be obtained from anonymous ftp sites of DDBJ, DISC and EBI. The list of the codon usage of genes in an organism as well as the sum of the codon usage of the organism was made searchable by the name of organism through a web site http://www.dna.affrc.go.jp/~nakamura/CUTG.html.

Original languageEnglish (US)
Number of pages1
JournalNucleic acids research
Volume27
Issue number1
DOIs
StatePublished - Jan 1 1999

ASJC Scopus subject areas

  • Genetics

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