An intuitive Bayesian spatial model for disease mapping that accounts for scaling

Andrea Riebler*, Sigrunn H. Sørbye, Daniel Simpson, Haavard Rue, Andrew B. Lawson, Duncan Lee, Ying MacNab

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

70 Scopus citations

Abstract

In recent years, disease mapping studies have become a routine application within geographical epidemiology and are typically analysed within a Bayesian hierarchical model formulation. A variety of model formulations for the latent level have been proposed but all come with inherent issues. In the classical BYM (Besag, York and Mollié) model, the spatially structured component cannot be seen independently from the unstructured component. This makes prior definitions for the hyperparameters of the two random effects challenging. There are alternative model formulations that address this confounding; however, the issue on how to choose interpretable hyperpriors is still unsolved. Here, we discuss a recently proposed parameterisation of the BYM model that leads to improved parameter control as the hyperparameters can be seen independently from each other. Furthermore, the need for a scaled spatial component is addressed, which facilitates assignment of interpretable hyperpriors and make these transferable between spatial applications with different graph structures. The hyperparameters themselves are used to define flexible extensions of simple base models. Consequently, penalised complexity priors for these parameters can be derived based on the information-theoretic distance from the flexible model to the base model, giving priors with clear interpretation. We provide implementation details for the new model formulation which preserve sparsity properties, and we investigate systematically the model performance and compare it to existing parameterisations. Through a simulation study, we show that the new model performs well, both showing good learning abilities and good shrinkage behaviour. In terms of model choice criteria, the proposed model performs at least equally well as existing parameterisations, but only the new formulation offers parameters that are interpretable and hyperpriors that have a clear meaning.

Original languageEnglish (US)
Pages (from-to)1145-1165
Number of pages21
JournalStatistical Methods in Medical Research
Volume25
Issue number4
DOIs
StatePublished - Aug 1 2016

Keywords

  • Bayesian hierarchical model
  • Disease mapping
  • Leroux model
  • integrated nested Laplace approximations
  • penalised complexity prior
  • scaling

ASJC Scopus subject areas

  • Epidemiology
  • Statistics and Probability
  • Health Information Management

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